SNP Profiles matching EQX/Z [CHA]

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 Key

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_Input profile
CTAGCCCTCTAACCGGCCCCATCCAACC
1._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
2._RUQ_109
_AGCCCT___GG___CCAA_
3._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
4._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
5._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
6._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
7._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
8._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
9._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCCATCCAACC
10._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCCATCCAACC
11._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCCATCCAACC
12._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCCATCCAACC
13._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCCATCCAACC
14._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCCATCCAACC
15._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCCATCCAACC
16._EQX_/Z_[CHA]
CTAGCCCTCTAACCGGCCCC_CCAACC
17._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCCATCCAACC
18._GC-01-055-3-10
CTAGCCCTCTAACCGGCCCC_CCAACC
 1516171819202122232425262728
_Input profile
ATCGCCCCCCGGGGCTCCCGGGCCAAAA
1._EQX_/Z_[CHA]
ATCGCCCCCCGGGGCTCCCGGGCCAAAA
2._RUQ_109
___CCCCGG_CTCCCGGGCCAAAA
3._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
4._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
5._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
6._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
7._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
8._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
9._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
10._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
11._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
12._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
13._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
14._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
15._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
16._EQX_/Z_[CHA]
ATCGCCCCCCGGAACTCCCGGGCCAAAA
17._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
18._GC-01-055-3-10
ATCGCCCCCCGGAACTCCCGGGCCAAAA
 2930313233343536373839   
_Input profile
AGAACCAACCACCCGTACATCGX_XX_XX_X
1._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
2._RUQ_109
_-CCAACCACCCGTCC__X_XX_XX_X
3._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
4._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
5._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
6._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
7._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
8._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
9._GC-01-055-3-10
GGAACCAACCACCCGTACATCGX_XX_XX_X
10._GC-01-055-3-10
GGAACCAACCACCCGTACATCGX_XX_XX_X
11._GC-01-055-3-10
GGAACCAACCACCCGTACATCGX_XX_XX_X
12._GC-01-055-3-10
GGAACCAACCACCCGTACATCGX_XX_XX_X
13._GC-01-055-3-10
GGAACCAACCACCCGTACATCGX_XX_XX_X
14._GC-01-055-3-10
GGAACCAACCACCCGTACATCGX_XX_XX_X
15._EQX_/Z_[CHA]
GGAACCAACCACCC_ACATCGX_XX_XX_X
16._EQX_/Z_[CHA]
GGAACCAACCACCCGTACATCGX_XX_XX_X
17._GC-01-055-3-10
GGAACCAACCACCC_ACATCGX_XX_XX_X
18._GC-01-055-3-10
GGAACCAACCACCCGTACATCGX_XX_XX_X

Input profile: EQX_/Z_[CHA] RUQ_109

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._EQX_/Z_[CHA]

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 Y9
 Dapeng Zhang, 2016

2._EQX_/Z_[CHA] RUQ_109

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._EQX_/Z_[CHA]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 3 > FP
 Dapeng Zhang, 2016

4._EQX_/Z_[CHA]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 13 > F
 Dapeng Zhang, 2016

5._EQX_/Z_[CHA]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 15
 Dapeng Zhang, 2016

6._EQX_/Z_[CHA]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 14
 Dapeng Zhang, 2016

7._EQX_/Z_[CHA]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 10
 Dapeng Zhang, 2016

8._EQX_/Z_[CHA]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._EQX_/Z_[CHA] GC-01-055-3-10

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

10._EQX_/Z_[CHA] GC-01-055-3-10

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._EQX_/Z_[CHA] GC-01-055-3-10

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._EQX_/Z_[CHA] GC-01-055-3-10

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

13._EQX_/Z_[CHA] GC-01-055-3-10

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

14._EQX_/Z_[CHA] GC-01-055-3-10

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

15._EQX_/Z_[CHA]

96.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 7 > FP
 Dapeng Zhang, 2016

16._EQX_/Z_[CHA]

96.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1310 12 > F
 Dapeng Zhang, 2016

17._EQX_/Z_[CHA] GC-01-055-3-10

96.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

18._EQX_/Z_[CHA] GC-01-055-3-10

96.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25